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姓名 孙世伟  性别 男 
联系方式   职称 副研究员 
研究方向 计算糖组学;生物信息学
个人主页  
个人介绍
简历:
科研与学术工作经历: 2011/9-至今,中国科学院计算技术研究所,前瞻研究实验室,副研究员 2007/9-2011/9,中国科学院计算技术研究所,前瞻研究实验室,助理研究员 教育经历: 1.2002/9–2007/7, 中国科学院计算技术研究所, 计算机技术, 博士 2.1998/9–2001/7, 南开大学, 物理化学, 硕士 3.1994/9–1998/7, 南开大学, 物理化学, 学士
社会任职:

CCF生物信息学专委会委员

Frontiers in Oncology杂志Big Data and Cancer Glycomedicine专刊副主编

获奖及荣誉:
中国科学院计算技术研究所百星计划
代表论著:

1.Chuncui Huang, Hui Wang, Dongbo Bu, Jinyu Zhou, Junchuan Dong, Jingwei Zhang, Huanyu Gao, Yaojun Wang, Wengang Chai*, Shiwei Sun*, Yan Li*, N-Glycan Analysis and N-Glycan Profiling using Multistage Mass Spectrometry with Improved Intelligent Precursor Selection. Carbohydrate Polymers, Jun 2020 1;237:116122.(通讯作者)

2.ChuncuiHuang, ShiweiSun, JingyuYan, HuiWang, JinyuZhou, HuanyuGao, WenchunXie, YanLi, WengangChai, Identi?cation of carbohydrate peripheral epitopes important for recognition by positive-ion MALDI multistage mass spectrometry. Carbohydrate Polymers, 2020, 229, 115528

3.Hui Wang, Jingwei Zhang, Junchuan Dong, Meijie Hou, Weiyi Pan, Dongbo Bu, Jinyu Zhou, Yaojun Wang, Keli Zhao, Yan Li, Chuncui Huang*, Shiwei Sun*. Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Spectra Tree Analysis. January 2020, Journal of Proteomics(通讯作者)

4.Yaojun Wang, Dongbo Bu, Chuncui Huang, Hui Wang, Jinyu Zhou, Junchuan Dong, Weiyi Pan, Jingwei Zhang, Qi Zhang, Yan Li* and Shiwei Sun*. Best-first search guided multistage mass spectrometry-based glycan identification. Bioinformatics, Jan 24, 2019. (通讯作者)

5.Fusong Ju, Jingwei Zhang, Dongbo Bu, Yan Li, Jinyu Zhou, Hui Wang, Yaojun Wang, Chuncui Huang* and Shiwei Sun*. De Novo glycan structural identification from mass spectra using tree merging strategy. Computational Biology and Chemistry. 2019(通讯作者)

6.Shiwei Sun#, Chuncui Huang#, Yaojun Wang#, Yaming Liu, Jingwei Zhang, Jinyu Zhou, Feng Gao, Fei Yang, Runsheng Chen, Barbara Mulloy, Wengang Chai*, Yan Li* and Dongbo Bu*. Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection. Analytical Chemistry. vol. 90, no. 24, pp. 14412-14422, Dec 18, 2018.

7.Hong Liu#, Maozhen Han#, Shuai Cheng Li, Guangming Tan, Shiwei Sun, Zhiqiang Hu, Pengshuo Yang Rui Wang, Yawen Liu, Feng Chen, Jianjun Peng, Hong Peng Hongxing Song, Yang Xia, Liqun Chu, Quan Zhou, Feng Guan, Jing Wu, Dongbo Bu, Kang Ning. Resilience of human gut microbial communities for the long stay with multiple dietary shifts, Gut 2018, DOI: 10.1136/gutjnl-2018-317298.

8.Yaojun Wang, Jingwei Zhang, Dongbo Bu, Shiwei Sun*. TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary. Current Bioinformatics, Volume 13 , Issue 5 , 2018.

9.Chunlin Huang#, Xingwu Liu#, Shiwei Sun, Shuai Cheng Li, Minghua Deng, Guangxue He, Haicang Zhang, Chao Wang, Yang Zhou, Yanlin Zhao*, Dongbo Bu*. Insights into the transmission of respiratory infectious diseases through empirical human contact networks. Scientific Reports. 2016 Aug 16;6:31484.

10.Shiwei Sun#,Xuetao Wang#,Xin Gao,Lihui Ren,Xiaoquan Su,Dongbo Bu*,Kang Ning*,Condensing Raman spectrum for single-cell phenotype analysis,BMC Bioinformatics,2015, 16

11.Yaojun Wang,Fei Yang,Peng Wu,Hong Zhang,Dongbo Bu,Shiwei Sun*, OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction,BMC Bioinformatics,2015,16(110).

12.Shenghui Zhang#,Yaojun Wang,Dongbo Bu,Hong Zhang,Shiwei Sun*,Pro bPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity,BMC Bioinformatics,2011,12(346):0-0.

13.Yantao Qiao,Hong Zhang,Dongbo Bu,Shiwei Sun*,PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum,BMC Bioinformatics,2011,12(234):0-0.

14.Sun Shiwei , Yang Fuquan,Yang Qing,Zhang Hong,Wang Yaojun,Bu Dongbo*,Ma Bin*,MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions,Journal of Proteome Research,2012,11(9):4509-4516.

15.Shiwei Sun#, Chungong Yu#, Yishan Jia, Yu Lin, Gongjin Dong, Changning Liu, Jinfen Zhang, Zhuo Zhang, Jinjin Cai, Hong Zhang, Dongbo Bu. Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra. Journal of Proteome Research,2008,7:202-208。

承担科研项目情况:

1.国家自然基金面上项目,31671369,基于质谱技术高通量的完整信息糖蛋白/糖肽的鉴定新方法研究,2017.01~2020.12,主持

2.国家自然基金面上项目,31270834,基于质谱词典思想的谱库设计及理论谱预测研 究,2013/01-2016/12, 主持

3.北京市自然科学基金面上项目, 5102029,基于高性能计算及重核技术的蛋白质质 谱比对服务器建设,2010/01~2012/12,主持

4.国家自然基金青年科学基金项目,30800189,磷酸化肽质谱鉴定中的算法问题研究 ,2008/01-2010/12,主持

所属部门:
前瞻研究实验室
其他备注:
硕导计算机应用技术
其他备注2:
 
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